MirGeneDB ID | Hru-Mir-242-P3b |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
Hru-Mir-242-P3a
|
Orthologues |
Agr-Mir-242
Bfl-Mir-242
Bko-Mir-242
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Eba-Mir-242
Lan-Mir-242
Lhy-Mir-242
Mgi-Mir-242
Mom-Mir-242
Npo-Mir-242
Ofu-Mir-242
Pau-Mir-242
Pca-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Rph-Mir-242
Sko-Mir-242
Snu-Mir-242
Spu-Mir-242
War-Mir-242
|
Node of Origin (locus) |
H. rufescens
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000016.1: 16931077-16931132 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUGGUAACCUAAACAUGCCACUGGUGUUGUUGCGUAGGCGUUGUGCACAGAUGUUGAAAAACCUGUGCAUCCCACCUAAGCGGCACUGCCAGUGGCCCAUCGACAAACACCCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUGGUAACCUAAACAU--| GU G CGUU AUGUU
GCCACUGGU UGUUGC UAGG GUGCACAG G
CGGUGACCG ACGGCG AUCC UACGUGUC A
AGUCCCACAAACAGCUACC^ UC A ACCC CAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Hru-Mir-242-P3b_5p |
mirBase accession | None |
Sequence |
0- UUGCGUAGGCGUUGUGCACAGA -22
Get sequence
|
Star sequence |
Hru-Mir-242-P3b_3p* |
mirBase accession | None |
Sequence |
34- UGUGCAUCCCACCUAAGCGGCA -56
Get sequence
|