MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-242

Family name MIR-242 (all species)
Seed GCGUAGG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-242
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049983.1: 386229-386284 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUGAGAUAUCCAUGAUGGCCGUCCAAGCGUUGCGUAGGCGUUGUGCACACUGUCUGGUAUAACCGUGUGUACCUCUCCUGCGUCACAUUUGGACGGCAUGUGCGCACAGCCCUCGG
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Structure
        10          20        30        40        50       
AUGAGAUAUCCAUGAUG--|         C  U       CGUU        U  CUG 
                   GCCGUCCAAG GU GCGUAGG    GUGCACAC GU   G
                   CGGCAGGUUU CA UGCGUCC    CAUGUGUG CA   U
GGCUCCCGACACGCGUGUA^         A  C       UCUC        C  AUA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-242_5p
mirBase accessionMIMAT0009497
Sequence 
0- UGCGUAGGCGUUGUGCACACUGU -23
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Star sequence

Bfl-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
33- CGUGUGUACCUCUCCUGCGUCAC -56
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