MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-242
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(ce11)		 chrIV: 4274262-4274320 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUAGUUCCCUCGUGGCUCGCGAGAGUAUUGCGUAGGCCUUUGCUUCGAGAGAGAAGCUUCAGUUCGCAGCAAUAUCCUCCGCAAAACUUUCCCCGGCUAUGCAAAAAAUGGUAAGA
Get precursor sequence
Structure
        10          20        30        40        50         
UGAAUAGUUCCCUCGUG--|  CGC      A     U   CCU     U   GAGAGAA 
                   GCU   GAGAGU UUGCG AGG   UUGCU CGA       \
                   CGG   CUUUCA AACGC UCC   AACGA GCU       G
AGAAUGGUAAAAAACGUAU^  CCC      A     C   UAU     C   UGACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-242_5p
mirBase accessionMIMAT0000298
Sequence 
0- UUGCGUAGGCCUUUGCUUCGA -21
Get sequence
Proposed targets microrna.org: MIMAT0000298
TargetScanWorm: cel-miR-242
Star sequence

Cel-Mir-242_3p*
mirBase accessionNone
Sequence 
38- GCAGCAAUAUCCUCCGCAAAA -59
Get sequence