MirGeneDB ID | Pdu-Mir-242-P4d |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-242-P4a
Pdu-Mir-242-P4b
Pdu-Mir-242-P4c
|
Orthologues |
Agr-Mir-242
Bfl-Mir-242
Bko-Mir-242
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Eba-Mir-242
Lan-Mir-242
Lhy-Mir-242
Mgi-Mir-242
Mom-Mir-242
Npo-Mir-242
Ofu-Mir-242
Pau-Mir-242
Pca-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Rph-Mir-242
Sko-Mir-242
Snu-Mir-242
Spu-Mir-242
War-Mir-242
|
Node of Origin (locus) |
P. dumerilii
|
Node of Origin (family) |
Nephrozoa
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000007.1: 29836784-29836846 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACGUUUUCUACAAGAAAUAUGUCUACGACUUGCGUAGGCGUUGUGCACAGAUUUGAUCACAGAGGUGGUCUGUGUAUUUUGCCUACGCAAAUUUGUAGGCGGUCAGAUUCAUCAAUCUUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UACGUUUUCUACAAGAAAUA- C-| UU UUUGAUCA
UGUCUACGA UUGCGUAGGCG GUGCACAGA \
GCGGAUGUU AACGCAUCCGU UAUGUGUCU C
AUUUUCUAACUACUUAGACUG UA^ UU GGUGGAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-242-P4d_5p |
mirBase accession | None |
Sequence |
0- UUGCGUAGGCGUUGUGCACAGA -22
Get sequence
|
Star sequence |
Pdu-Mir-242-P4d_3p* |
mirBase accession | None |
Sequence |
41- UGUGUAUUUUGCCUACGCAAAU -63
Get sequence
|