MirGeneDB ID | Mgi-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-242
Ava-Mir-242-P9
Ava-Mir-242-P10
Bfl-Mir-242
Bko-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Eba-Mir-242
Hru-Mir-242-P3a
Hru-Mir-242-P3b
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Lhy-Mir-242
Mom-Mir-242
Nag-Mir-242-P7
Nag-Mir-242-P8
Npo-Mir-242
Ofu-Mir-242
Pau-Mir-242
Pca-Mir-242
Pdu-Mir-242-P4a
Pdu-Mir-242-P4b
Pdu-Mir-242-P4c
Pdu-Mir-242-P4d
Pfl-Mir-242
Pmi-Mir-242
Pve-Mir-242-P5
Pve-Mir-242-P6
Rph-Mir-242
Sko-Mir-242
Snu-Mir-242
Spu-Mir-242
War-Mir-242
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Nephrozoa
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Genome context (CGI_GCA_000297895.1) |
scaffold507: 280160-280218 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUUCGGUGCGGAGACUUUUCCUGUAAGUGUUGCGUAGGCGUUGUGCACAGUCGGAACUGACAUCACUGUGUAUUUUGUCUACACAGCAUCCAUCAAGGAACUACAUCGACUUAGGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUCGGUGCGGAGACUU GUAA--| C UU CGGAAC
UUCCU GUGUUG GUAGGCG GUGCACAGU \
AAGGA UACGAC CAUCUGU UAUGUGUCA U
GGAGGAUUCAGCUACAUC ACUACC^ A UU CUACAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-242_5p |
mirBase accession | None |
Sequence |
0- UUGCGUAGGCGUUGUGCACAGU -22
Get sequence
|
Star sequence |
Mgi-Mir-242_3p* |
mirBase accession | None |
Sequence |
37- UGUGUAUUUUGUCUACACAGCA -59
Get sequence
|