MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold507: 280160-280218 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCGGUGCGGAGACUUUUCCUGUAAGUGUUGCGUAGGCGUUGUGCACAGUCGGAACUGACAUCACUGUGUAUUUUGUCUACACAGCAUCCAUCAAGGAACUACAUCGACUUAGGAGG
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Structure
        10        20          30        40        50         
UUUUCGGUGCGGAGACUU     GUAA--|     C       UU         CGGAAC 
                  UUCCU      GUGUUG GUAGGCG  GUGCACAGU      \
                  AAGGA      UACGAC CAUCUGU  UAUGUGUCA      U
GGAGGAUUCAGCUACAUC     ACUACC^     A       UU         CUACAG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Mgi-Mir-242_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCACAGU -22
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Star sequence

Mgi-Mir-242_3p*
mirBase accessionNone
Sequence 
37- UGUGUAUUUUGUCUACACAGCA -59
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