MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000005.1: 1372726-1372781 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACGUAAUGAGGCCAAGCAAAACUCAAAUUUUGCGUAGACGUUGUGCACAGACUAUUUUAACUCUGUGUUUUUCGUCUAUUCAGCCUUUGGGUUGAUAAAAACUGCAAUUCCGAUU
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Structure
        10        20          30        40        50       
GACGUAAUGAGGCCAAGCAA--|       UU   C       UUGU       CUAU 
                      AACUCAAA  UUG GUAGACG    GCACAGA    U
                      UUGGGUUU  GAC UAUCUGC    UGUGUCU    U
UUAGCCUUAACGUCAAAAAUAG^       CC   U       UUUU       CAAU 
    110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pau-Mir-242_5p (predicted)
mirBase accessionNone
Sequence 
0- UUGCGUAGACGUUGUGCACAGA -22
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Star sequence

Pau-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
34- UGUGUUUUUCGUCUAUUCAGCC -56
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