MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-242-v1

Family name MIR-242 (all species)
Seed GCGUAGG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-242-v2 
Orthologues Agr-Mir-242  Bfl-Mir-242  Bko-Mir-242  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Lan-Mir-242  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(BraLan2)		 Sc0000023: 499951-500006 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAUUCAGCCAUGAUAGCCGUCCAAGUGUUGCGUAGGCGUUGUGCACACUGUCUGACACAACCGUGUGUACCUCUCCUGCGGCACAUCUGGACGGCAUGUGCGCACAGCCAGCAG
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Structure
        10          20        30         40        50       
GGGAUUCAGCCAUGAUA--|       AG   U  -     CGUU        U  CUG 
                   GCCGUCCA  UGU GC GUAGG    GUGCACAC GU   A
                   CGGCAGGU  ACA CG CGUCC    CAUGUGUG CA   C
GACGACCGACACGCGUGUA^       CU   -  G     UCUC        C  ACA 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-242-v1_5p
mirBase accessionNone
Sequence 
0- UGCGUAGGCGUUGUGCACACUGU -23
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Star sequence

Bla-Mir-242-v1_3p*
mirBase accessionNone
Sequence 
33- CGUGUGUACCUCUCCUGCGGCAC -56
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