MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(LinAna_1.0)		 LFEI01001408: 48107-48163 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAACAGCGGCGGGUAAGGGAGGGCCAGAUGUUGCGUAGGCGUUGUGCAUAGCUUUCAGACGACGUUAUGCAUCUCAUCUGCGCAUCCUCGGUGUUCCCCGGGACUUCCACGAAGGCU
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Structure
        10           20        30        40        50        
UAACAGCGGCGGGUAAG---|   G   A  UGU        CGUU         UUUCA 
                    GGAG GCC GA   UGCGUAGG    GUGCAUAGC     \
                    CCUU UGG CU   ACGCGUCU    UACGUAUUG     G
UCGGAAGCACCUUCAGGGCC^   G   -  CCU        ACUC         CAGCA 
     110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To
Mature sequence

Lan-Mir-242_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCAUAGC -22
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Star sequence

Lan-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
35- UAUGCAUCUCAUCUGCGCAUCC -57
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