MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-242

Family name MIR-242 (all species)
Seed GCGUAGG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-242
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Skow_1.1)		 NW_003141865.1: 15153-15212 [+]
Precursor
(pre-Mir +30nt flank)
ACGUCUCACUCGAACCUCACUCUAAUGUGUUGCGUAGGCGUUGUGCACAGUGACGUAUUACAUAAUUCCUGUGCAUUUCUCCCACGCAUAGCGUUGAAGUGAAAUGUCAUCAUCAUGGAG
Get precursor sequence
Structure
        10          20        30        40        50          
ACGUCUCACUCGAACCU--|   C      GU     A  CGUU        U ACGUAUU 
                   CACU UAAUGU  UGCGU GG    GUGCACAG G       \
                   GUGA GUUGCG  ACGCA CC    UACGUGUC C       A
GAGGUACUACUACUGUAAA^   A      AU     C  UCUU        - UUAAUAC 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sko-Mir-242_5p
mirBase accessionMIMAT0009637
Sequence 
0- UGCGUAGGCGUUGUGCACAGUG -22
Get sequence
Star sequence

Sko-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
38- CUGUGCAUUUCUCCCACGCAUA -60
Get sequence