MirGeneDB ID | Bko-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-242
Ava-Mir-242-P9
Ava-Mir-242-P10
Bfl-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Eba-Mir-242
Hru-Mir-242-P3a
Hru-Mir-242-P3b
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Lhy-Mir-242
Mgi-Mir-242
Mom-Mir-242
Nag-Mir-242-P7
Nag-Mir-242-P8
Npo-Mir-242
Ofu-Mir-242
Pau-Mir-242
Pca-Mir-242
Pdu-Mir-242-P4a
Pdu-Mir-242-P4b
Pdu-Mir-242-P4c
Pdu-Mir-242-P4d
Pfl-Mir-242
Pmi-Mir-242
Pve-Mir-242-P5
Pve-Mir-242-P6
Rph-Mir-242
Sko-Mir-242
Snu-Mir-242
Spu-Mir-242
War-Mir-242
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000172.1: 202468-202564 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAUGAAACGCUUGUCUUGUGAAUUUUGAUAUUGCGUAGGCGUUUUGCACUGAUUGAUAAUAUUAGGUUAAUCUAAGAGCUUUUAUUAGCUUUUAAAAGCCGUUCAGUGAAAAAGCCUAGACGCAAAAUUUAAAUUCAGAUUAUCAUCGGCCAAAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GAUGAAACGCUUGUCUUG-- U A --| G G UUGAUAAUAUUAGGUUAAUCUAAG
UGAAUUU GAU UUGCGU AGGC UUUU CACUGA A
ACUUAAA UUA AACGCA UCCG AAAA GUGACU G
UAAAAACCGGCUACUAUUAG U A GA^ A - UGCCGAAAAUUUUCGAUUAUUUUC
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bko-Mir-242_5p |
mirBase accession | None |
Sequence |
0- UUGCGUAGGCGUUUUGCACUGA -22
Get sequence
|
Star sequence |
Bko-Mir-242_3p* |
mirBase accession | None |
Sequence |
74- AGUGAAAAAGCCUAGACGCAAAA -97
Get sequence
|