MirGeneDB 3.0
MirGeneDB ID

Spu-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-242
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  War-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Spur_5.0)		 AAGJ06000857.1: 1093867-1093927 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUGAUAUAUGUAACACCAUGUCGGGCAUUGCGUAGGCGUUGUGCACAGUGUUCUUUAAAUUACAAUUGUGCAUCUCAUCCACGUAAAUCACGGCACUGGUCACUAAUCAUCGCUGGAC
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Structure
        10         20         30        40         50          
CUGCUGAUAUAUGUAAC-    -|    GGCA      A  CGUU-         GUUCUUU 
                  ACCA UGUCG    UUGCGU GG     GUGCACAGU       \
                  UGGU ACGGC    AAUGCA CC     UACGUGUUA       A
CAGGUCGCUACUAAUCAC    C^    ACUA      -  UACUC         ACAUUAA 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-242_5p
mirBase accessionMIMAT0009647
Sequence 
0- UUGCGUAGGCGUUGUGCACAGU -22
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Star sequence

Spu-Mir-242_3p*
mirBase accessionNone
Sequence 
39- UGUGCAUCUCAUCCACGUAAAU -61
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