MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-1994-P1

Family name MIR-1994 (all species)
Seed GAGACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-1994-P2 
Orthologues Agr-Mir-1994-P1  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P1  Efe-Mir-1994  Esc-Mir-1994-P1  Hru-Mir-1994-P1  Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lgi-Mir-1994-P1  Lhy-Mir-1994-P1  Llo-Mir-1994  Mgi-Mir-1994-P1  Mom-Mir-1994-P1  Npo-Mir-1994-P1  Obi-Mir-1994-P1  Ovu-Mir-1994-P1  Pve-Mir-1994-P1  War-Mir-1994-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(Ruditapes_GCA_009026015)
CM018530.1: 33665252-33665312 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAAUGAUACGCAUUUAAGGAGUGAAUCACGGGGCGACACCCUCGUCUCCAUGCCAUUCAAACAAGCAUGAGACAGUGUGUCCUCCCAUGAAUCGCUUUCGUUAUCAUCAUCAAUACAAC
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Structure
        10          20        30        40        50        60 
GGGAAUGAUACGCAUUUAA--|      A   C    C     C  C     C   CCAUUC 
                     GGAGUGA UCA GGGG GACAC CU GUCUC AUG      \
                     UUUCGCU AGU CCCU CUGUG GA CAGAG UAC      A
CAACAUAACUACUACUAUUGC^      A   A    C     U  -     -   GAACAA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-1994-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGGCGACACCCUCGUCUCCAUG -24
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Mature sequence

Rph-Mir-1994-P1_3p

mirBase accessionNone
Sequence
39- UGAGACAGUGUGUCCUCCCAUG -61
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