MirGeneDB ID | Llo-Mir-1994 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1994-P1
Agr-Mir-1994-P2
Cte-Mir-1994
Dgr-Mir-1994
Eba-Mir-1994-P1
Eba-Mir-1994-P2
Efe-Mir-1994
Esc-Mir-1994-P1
Esc-Mir-1994-P2
Hru-Mir-1994-P1
Hru-Mir-1994-P2
Lan-Mir-1994-o1a
Lan-Mir-1994-o1b
Lan-Mir-1994-o2a
Lan-Mir-1994-o2b
Lgi-Mir-1994-P1
Lgi-Mir-1994-P2
Lhy-Mir-1994-P1
Mgi-Mir-1994-P1
Mgi-Mir-1994-P2
Mom-Mir-1994-P1
Mom-Mir-1994-P2
Npo-Mir-1994-P1
Npo-Mir-1994-P2
Obi-Mir-1994-P1
Obi-Mir-1994-P2
Ofu-Mir-1994-P9
Ofu-Mir-1994-P10
Ovu-Mir-1994-P1
Ovu-Mir-1994-P2
Pau-Mir-1994-o3
Pau-Mir-1994-o4
Pve-Mir-1994-P1
Pve-Mir-1994-P2a
Pve-Mir-1994-P2b
Rph-Mir-1994-P1
Rph-Mir-1994-P2
Snu-Mir-1994-P5
Snu-Mir-1994-P6
Snu-Mir-1994-P7
Snu-Mir-1994-P8
War-Mir-1994-P1
War-Mir-1994-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU343003.1: 14179230-14179287 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGAUACUGCAGAAUCAAAAUUUCUUCCACGGUUGGACAUGCUUGUCUGCAUGGCAUCAUAAUCAUGAGACAGUGUGUCCUCCCUCGGAAUGAAAGCUCUAACAUCGAAUGUCACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGAUACUGCAGAAUCAAAA- -| AC UU U G GCAU
UUUC UUCC GG GGACAUGCU GUCU CAUG C
AAAG AAGG CC CCUGUGUGA CAGA GUAC A
ACCACUGUAAGCUACAAUCUCG U^ CU CU - - UAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Llo-Mir-1994_5p* |
mirBase accession | None |
Sequence |
0- CGGUUGGACAUGCUUGUCUGCAUG -24
Get sequence
|
Mature sequence |
Llo-Mir-1994_3p |
mirBase accession | None |
Sequence |
36- UGAGACAGUGUGUCCUCCCUCG -58
Get sequence
|