MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-1994-o2a

Family name MIR-1994 (all species)
Seed GAGACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lan-Mir-1994-o2b 
Orthologues Agr-Mir-1994-P2  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P2  Efe-Mir-1994  Esc-Mir-1994-P2  Hru-Mir-1994-P2  Lgi-Mir-1994-P2  Llo-Mir-1994  Mgi-Mir-1994-P2  Mom-Mir-1994-P2  Npo-Mir-1994-P2  Obi-Mir-1994-P2  Ovu-Mir-1994-P2  Pve-Mir-1994-P2a  Rph-Mir-1994-P2  War-Mir-1994-P2 
Node of Origin (locus) L. anatina
Node of Origin (family) Lophotrochozoa
Genome context
(LinAna_1.0)		 LFEI01001236: 8383-8454 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGGCGCUGUGAAAGGAACAUCAGUCUCAAGGAGGACUCACUAUCUGCAUUCUCCACGCAUGCGCGUUCAGUUGUUAAUGAGACAGUGUGUCCUCCCUCGGAUUGAGUUCUGCAUACAACCUGCCAAGCG
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Structure
        10           20        30        40        50        60      
AGAUGGCGCUGUGAAAG---|   A       CAA       U    A   G    CUCCACGCAUGC 
                    GAAC UCAGUCU   GGAGGAC CACU UCU CAUU            \
                    CUUG AGUUAGG   CCUCCUG GUGA AGA GUAA            G
GCGAACCGUCCAACAUACGU^   -       CUC       U    C   -    UUGUUGACUUGC 
130       120       110        100        90         80        70
Deep sequencing
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CommentIt is unclear how the two paralogues of Mir-1994 in the brachiopod and the phoronid relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Lan-Mir-1994-o2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAGGAGGACUCACUAUCUGCAUU -23
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Mature sequence

Lan-Mir-1994-o2a_3p
mirBase accessionNone
Sequence 
50- UGAGACAGUGUGUCCUCCCUCG -72
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