MirGeneDB ID | Lan-Mir-1994-o2b |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-1994-o1a
Lan-Mir-1994-o1b
Lan-Mir-1994-o2a
|
Orthologues |
Agr-Mir-1994-P2
Cte-Mir-1994
Dgr-Mir-1994
Eba-Mir-1994-P2
Efe-Mir-1994
Esc-Mir-1994-P2
Hru-Mir-1994-P2
Lgi-Mir-1994-P2
Llo-Mir-1994
Mgi-Mir-1994-P2
Mom-Mir-1994-P2
Npo-Mir-1994-P2
Obi-Mir-1994-P2
Ovu-Mir-1994-P2
Pve-Mir-1994-P2b
Rph-Mir-1994-P2
War-Mir-1994-P2
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (LinAna_1.0) |
LFEI01000901: 32115-32186 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAUGGCGCUGCGAAAAGAACAUCAGUCUCAAGGAGGACUCACUAUCUGCAUUCUCCACGCAUGCGCGUUCAGUUGUUAAUGAGACAGUGUGUCCUCCCUCGGAUUGAGUUCUCCAUACAACCUGCCAAGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAUGGCGCUGCGAAAA---| A CAA U A G CUCCACGCAUGC
GAAC UCAGUCU GGAGGAC CACU UCU CAUU \
CUUG AGUUAGG CCUCCUG GUGA AGA GUAA G
GCGAACCGUCCAACAUACCU^ - CUC U C - UUGUUGACUUGC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is unclear how the two paralogues of Mir-1994 in the brachiopod and the phoronid relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-1994-o2b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AAGGAGGACUCACUAUCUGCAUU -23
Get sequence
|
Mature sequence |
Lan-Mir-1994-o2b_3p |
mirBase accession | None |
Sequence |
50- UGAGACAGUGUGUCCUCCCUCG -72
Get sequence
|