MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-1994

Family name MIR-1994 (all species)
Seed GAGACAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1994
Paralogues
Orthologues Agr-Mir-1994-P1  Agr-Mir-1994-P2  Dgr-Mir-1994  Eba-Mir-1994-P1  Eba-Mir-1994-P2  Efe-Mir-1994  Esc-Mir-1994-P1  Esc-Mir-1994-P2  Hru-Mir-1994-P1  Hru-Mir-1994-P2  Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lan-Mir-1994-o2a  Lan-Mir-1994-o2b  Lgi-Mir-1994-P1  Lgi-Mir-1994-P2  Lhy-Mir-1994-P1  Llo-Mir-1994  Mgi-Mir-1994-P1  Mgi-Mir-1994-P2  Mom-Mir-1994-P1  Mom-Mir-1994-P2  Npo-Mir-1994-P1  Npo-Mir-1994-P2  Obi-Mir-1994-P1  Obi-Mir-1994-P2  Ofu-Mir-1994-P9  Ofu-Mir-1994-P10  Ovu-Mir-1994-P1  Ovu-Mir-1994-P2  Pau-Mir-1994-o3  Pau-Mir-1994-o4  Pve-Mir-1994-P1  Pve-Mir-1994-P2a  Pve-Mir-1994-P2b  Rph-Mir-1994-P1  Rph-Mir-1994-P2  Snu-Mir-1994-P5  Snu-Mir-1994-P6  Snu-Mir-1994-P7  Snu-Mir-1994-P8  War-Mir-1994-P1  War-Mir-1994-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_194: 66138-66207 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCUGGGAUUUCACUGAGCGGUUGUGCAUCGGGUGGAAGCGCUGUCUGCACCGGAUAUCCGGAUUGUAUCCGUCCGUUGAGACAGUGUGUCCUCCCUCUGGACGCCGUUCACUCUCAGCAUAGUCAUCU
Get precursor sequence
Structure
        10           20        30        40        50        60     
AUCCUGGGAUUUCACUG---|     U  G  UC   U   A         G  C GGAUAUCCGGA 
                    AGCGGU GU CA  GGG GGA GCGCUGUCU CA C           \
                    UUGCCG CA GU  CCC CCU UGUGACAGA GU G           U
UCUACUGAUACGACUCUCAC^     -  G  CU   U   G         -  U CCUGCCUAUGU 
.       120       110        100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-1994_5p*
mirBase accessionNone
Sequence 
0- CGGGUGGAAGCGCUGUCUGCACC -23
Get sequence
Mature sequence

Cte-Mir-1994_3p
mirBase accessionMIMAT0009702
Sequence 
48- UGAGACAGUGUGUCCUCCCUCU -70
Get sequence