Mir-1994-P1

MirGeneDB ID

Hru-Mir-1994-P1

Family name

MIR-1994 (all species)

Seed

GAGACAG

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Hru-Mir-1994-P2

Orthologues

Agr-Mir-1994-P1 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P1 Efe-Mir-1994 Esc-Mir-1994-P1 Lan-Mir-1994-o1a Lan-Mir-1994-o1b Lgi-Mir-1994-P1 Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mom-Mir-1994-P1 Npo-Mir-1994-P1 Obi-Mir-1994-P1 Ovu-Mir-1994-P1 Pve-Mir-1994-P1 Rph-Mir-1994-P1 War-Mir-1994-P1

Node of Origin (locus)

Mollusca

Node of Origin (family)

Lophotrochozoa

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000042.1: 3513498-3513556 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCUUCCUGUUUUUUCUGACCUUUACUCAGGGGAGGUUACUCUCGUCUACAUGUUCAUACCUUUCAUGAGACAGUGUGUCCUCCCUUGAGUAGCCGGUUACAAGCAUCUACAGAUAAA

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Structure

        10         20         30        40        50          
CACCUUCCUGUUUUUUC-     U-|             U   U  C    A    UUCAU 
                  UGACC  UUACUCAGGGGAGG UAC CU GUCU CAUG     \
                  AUUGG  GAUGAGUUCCCUCC GUG GA CAGA GUAC     A
AAAUAGACAUCUACGAAC     CC^             U   U  -    -    UUUCC 
       110       100        90        80         70

Deep sequencing

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Comment

Although there are reads of the 3p arm they are short so it is unclear if this is a Group 1 or Group 2 miRNA.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ha	Ha

Star sequence

Hru-Mir-1994-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GGGGAGGUUACUCUCGUCUACAUG -24

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Mature sequence

Hru-Mir-1994-P1_3p

mirBase accession

None

Sequence

37- UGAGACAGUGUGUCCUCCCUUG -59

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