MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1994-P1

Family name MIR-1994 (all species)
Seed GAGACAG
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-1994-P2 
Orthologues Agr-Mir-1994-P1  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P1  Efe-Mir-1994  Esc-Mir-1994-P1  Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lgi-Mir-1994-P1  Lhy-Mir-1994-P1  Llo-Mir-1994  Mgi-Mir-1994-P1  Mom-Mir-1994-P1  Npo-Mir-1994-P1  Obi-Mir-1994-P1  Ovu-Mir-1994-P1  Pve-Mir-1994-P1  Rph-Mir-1994-P1  War-Mir-1994-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000042.1: 3513498-3513556 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCUUCCUGUUUUUUCUGACCUUUACUCAGGGGAGGUUACUCUCGUCUACAUGUUCAUACCUUUCAUGAGACAGUGUGUCCUCCCUUGAGUAGCCGGUUACAAGCAUCUACAGAUAAA
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Structure
        10         20         30        40        50          
CACCUUCCUGUUUUUUC-     U-|             U   U  C    A    UUCAU 
                  UGACC  UUACUCAGGGGAGG UAC CU GUCU CAUG     \
                  AUUGG  GAUGAGUUCCCUCC GUG GA CAGA GUAC     A
AAAUAGACAUCUACGAAC     CC^             U   U  -    -    UUUCC 
       110       100        90        80         70
Deep sequencing
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CommentAlthough there are reads of the 3p arm they are short so it is unclear if this is a Group 1 or Group 2 miRNA.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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Star sequence

Hru-Mir-1994-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGGAGGUUACUCUCGUCUACAUG -24
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Mature sequence

Hru-Mir-1994-P1_3p
mirBase accessionNone
Sequence 
37- UGAGACAGUGUGUCCUCCCUUG -59
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