MirGeneDB ID | Obi-Mir-1994-P1 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-1994-P2
|
Orthologues |
Agr-Mir-1994-P1
Cte-Mir-1994
Dgr-Mir-1994
Eba-Mir-1994-P1
Efe-Mir-1994
Esc-Mir-1994-P1
Hru-Mir-1994-P1
Lan-Mir-1994-o1a
Lan-Mir-1994-o1b
Lgi-Mir-1994-P1
Lhy-Mir-1994-P1
Llo-Mir-1994
Mgi-Mir-1994-P1
Mom-Mir-1994-P1
Npo-Mir-1994-P1
Ovu-Mir-1994-P1
Pve-Mir-1994-P1
Rph-Mir-1994-P1
War-Mir-1994-P1
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (PRJNA270931_OBI) |
KQ417078: 175554-175616 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAAAAAAAUUCAACAAUGACCAUAUGCUAAGAGUGGACACUCUGUUCUACAUGUUGAAAAGUACUGACCAUGAGACAGUGUGUCCUCCCUUGGCAGGGGUCAAACUGCUGCAGCCCAAAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAAAAAAAAUUCAACAA---| AUA AGU U U A UUGAAAA
UGACC UGCUAAG GGACAC CUGU CU CAUG \
ACUGG ACGGUUC CCUGUG GACA GA GUAC G
UAGAAACCCGACGUCGUCAA^ GG- CCU U - - CAGUCAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Mir-1994-P1_5p* |
mirBase accession | None |
Sequence |
0- AGAGUGGACACUCUGUUCUACAUG -24
Get sequence
|
Mature sequence |
Obi-Mir-1994-P1_3p |
mirBase accession | None |
Sequence |
41- UGAGACAGUGUGUCCUCCCUUG -63
Get sequence
|