MirGeneDB ID | Obi-Mir-1994-P2 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-1994-P1
|
Orthologues |
Agr-Mir-1994-P2
Cte-Mir-1994
Dgr-Mir-1994
Eba-Mir-1994-P2
Efe-Mir-1994
Esc-Mir-1994-P2
Hru-Mir-1994-P2
Lan-Mir-1994-o2a
Lan-Mir-1994-o2b
Lgi-Mir-1994-P2
Llo-Mir-1994
Mgi-Mir-1994-P2
Mom-Mir-1994-P2
Npo-Mir-1994-P2
Ovu-Mir-1994-P2
Pve-Mir-1994-P2a
Pve-Mir-1994-P2b
Rph-Mir-1994-P2
War-Mir-1994-P2
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (PRJNA270931_OBI) |
KQ417078: 177477-177535 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUUUGAAAUAGAAAAUGGCUAACUUCUUAGGAAGAACAAACUGAUCCCACAUUAAUGAUGCUCUGUGAGACAGUGUGUCCUCCCUCAGGGGUACAUCUACAACAGCCACUCCGUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUUUUGAAAUAGAAAAUGGCUA--| U A A A A C UUAAU
ACUUCU AGG AG ACA ACUG UC CACA G
UGGGGA UCC UC UGU UGAC AG GUGU A
ACCUGCCUCACCGACAACAUCUACA^ C C C G - A CUCGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Mir-1994-P2_5p* |
mirBase accession | None |
Sequence |
0- AGGAAGAACAAACUGAUCCCACA -23
Get sequence
|
Mature sequence |
Obi-Mir-1994-P2_3p |
mirBase accession | None |
Sequence |
37- UGAGACAGUGUGUCCUCCCUCA -59
Get sequence
|