MirGeneDB 2.1

MirGeneDB ID

Obi-Mir-1994-P2

Family name MIR-1994 (all species)
Seed GAGACAG
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Mir-1994-P1 
Orthologues Cgi-Mir-1994-P2  Cte-Mir-1994  Efe-Mir-1994  Esc-Mir-1994-P2  Lgi-Mir-1994-P2  Npo-Mir-1994-P2  Ovu-Mir-1994-P2 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(PRJNA270931_OBI)
KQ417078: 177477-177535 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUUGAAAUAGAAAAUGGCUAACUUCUUAGGAAGAACAAACUGAUCCCACAUUAAUGAUGCUCUGUGAGACAGUGUGUCCUCCCUCAGGGGUACAUCUACAACAGCCACUCCGUCCA
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Structure
        10        20          30        40        50         
UGUUUUGAAAUAGAAAAUGGCUA--|     U   A  A   A    A  C    UUAAU 
                         ACUUCU AGG AG ACA ACUG UC CACA     G
                         UGGGGA UCC UC UGU UGAC AG GUGU     A
ACCUGCCUCACCGACAACAUCUACA^     C   C  C   G    -  A    CUCGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-1994-P2_5p*

mirBase accessionNone
Sequence
0- AGGAAGAACAAACUGAUCCCACA -23
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Mature sequence

Obi-Mir-1994-P2_3p

mirBase accessionNone
Sequence
37- UGAGACAGUGUGUCCUCCCUCA -59
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