Mir-1994-P2

MirGeneDB ID

Mgi-Mir-1994-P2

Family name

MIR-1994 (all species)

Seed

GAGACAG

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-1994-P1

Orthologues

Agr-Mir-1994-P2 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P2 Efe-Mir-1994 Esc-Mir-1994-P2 Hru-Mir-1994-P2 Lan-Mir-1994-o2a Lan-Mir-1994-o2b Lgi-Mir-1994-P2 Llo-Mir-1994 Mom-Mir-1994-P2 Npo-Mir-1994-P2 Obi-Mir-1994-P2 Ovu-Mir-1994-P2 Pve-Mir-1994-P2a Pve-Mir-1994-P2b Rph-Mir-1994-P2 War-Mir-1994-P2

Node of Origin (locus)

Mollusca

Node of Origin (family)

Lophotrochozoa

Genome context
(CGI_GCA_000297895.1)

scaffold950: 63808-63866 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAAAAUUGACAAAACAUGGCGACUGCUCUCAGGGUGGUAAUGCUGCCUACAUGGUGAGGUGACAACAUGAGACAGUGUGUCCUCCCUAAGUUUCAGAUCUAAGCCGAAUGCUGCUGAAG

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Structure

        10        20          30        40        50         
UAAAAUUGACAAAACAUGGC  -   CU-| C    U  UA      C  A    GUGAG 
                    GA CUG   CU AGGG GG  AUGCUG CU CAUG     G
                    CU GAC   GA UCCC CC  UGUGAC GA GUAC     U
GAAGUCGUCGUAAGCCGAAU  A   UUU^ A    U  UG      A  -    AACAG 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-1994-P2_5p*

mirBase accession

None

Sequence

0- AGGGUGGUAAUGCUGCCUACAUG -23

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Mature sequence

Mgi-Mir-1994-P2_3p

mirBase accession

None

Sequence

37- UGAGACAGUGUGUCCUCCCUAA -59

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