MirGeneDB ID | Rph-Mir-1994-P2 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Mir-1994-P1
|
Orthologues |
Agr-Mir-1994-P2
Cte-Mir-1994
Dgr-Mir-1994
Eba-Mir-1994-P2
Efe-Mir-1994
Esc-Mir-1994-P2
Hru-Mir-1994-P2
Lan-Mir-1994-o2a
Lan-Mir-1994-o2b
Lgi-Mir-1994-P2
Llo-Mir-1994
Mgi-Mir-1994-P2
Mom-Mir-1994-P2
Npo-Mir-1994-P2
Obi-Mir-1994-P2
Ovu-Mir-1994-P2
Pve-Mir-1994-P2a
Pve-Mir-1994-P2b
War-Mir-1994-P2
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (Ruditapes_GCA_009026015) |
CM018530.1: 33665598-33665657 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCGGCAGAACAGAAAUGGCCUCUUUUCUCAGGGUAGACCUGCUGUUCACAUGGUUAUUAACUUGACAUGAGACAGUGUGUCCUCCCUCAGGUUUUUAUGGCCAAUUAUCUACAUUCUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCGGCAGAACAGAAAUG UCUUU--| C UA C CA GUUAUU
GCC UCU AGGG GAC UGCUGUU CAUG \
CGG GGA UCCC CUG GUGACAG GUAC A
UAUCUUACAUCUAUUAAC UAUUUUU^ C UC U A- AGUUCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-1994-P2_5p* |
mirBase accession | None |
Sequence |
0- AGGGUAGACCUGCUGUUCACAUG -23
Get sequence
|
Mature sequence |
Rph-Mir-1994-P2_3p |
mirBase accession | None |
Sequence |
38- UGAGACAGUGUGUCCUCCCUCA -60
Get sequence
|