MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-1994-P2

Family name MIR-1994 (all species)
Seed GAGACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-1994-P1 
Orthologues Agr-Mir-1994-P2  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P2  Efe-Mir-1994  Esc-Mir-1994-P2  Hru-Mir-1994-P2  Lan-Mir-1994-o2a  Lan-Mir-1994-o2b  Lgi-Mir-1994-P2  Llo-Mir-1994  Mgi-Mir-1994-P2  Mom-Mir-1994-P2  Npo-Mir-1994-P2  Obi-Mir-1994-P2  Ovu-Mir-1994-P2  Pve-Mir-1994-P2a  Pve-Mir-1994-P2b  War-Mir-1994-P2 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018530.1: 33665598-33665657 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCGGCAGAACAGAAAUGGCCUCUUUUCUCAGGGUAGACCUGCUGUUCACAUGGUUAUUAACUUGACAUGAGACAGUGUGUCCUCCCUCAGGUUUUUAUGGCCAAUUAUCUACAUUCUAU
Get precursor sequence
Structure
        10        20          30        40        50          
AGCGGCAGAACAGAAAUG   UCUUU--|  C    UA   C       CA    GUUAUU 
                  GCC       UCU AGGG  GAC UGCUGUU  CAUG      \
                  CGG       GGA UCCC  CUG GUGACAG  GUAC      A
UAUCUUACAUCUAUUAAC   UAUUUUU^  C    UC   U       A-    AGUUCA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-1994-P2_5p*
mirBase accessionNone
Sequence 
0- AGGGUAGACCUGCUGUUCACAUG -23
Get sequence
Mature sequence

Rph-Mir-1994-P2_3p
mirBase accessionNone
Sequence 
38- UGAGACAGUGUGUCCUCCCUCA -60
Get sequence