MirGeneDB 2.1

MirGeneDB ID

Npo-Mir-1994-P2

Family name MIR-1994 (all species)
Seed GAGACAG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-1994-P1 
Orthologues Cgi-Mir-1994-P2  Cte-Mir-1994  Efe-Mir-1994  Esc-Mir-1994-P2  Lgi-Mir-1994-P2  Obi-Mir-1994-P2  Ovu-Mir-1994-P2 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_018389105_NPO)
JACATO010001148.1: 5202-5261 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGCAGUGACUUAAUGGCUGCUGUUCUUAGGAAGAACUUGUUGUCUUCACAUGAUCUUGAAAUUUGUGAGACAGUGUGUCCUCCCUCAGAUCCCGUGUUGUAGCCAAACCAUCCAUUA
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Structure
        10          20        30        40        50          
AAAAGCAGUGACUUAAU--|  UGCUGU   U   A  A  U GU     U    UGAUCU 
                   GGC      UCU AGG AG AC U  UGUCU CACA      \
                   UUG      AGA UCC UC UG G  ACAGA GUGU      U
AUUACCUACCAAACCGAUG^  UGCCCU   C   C  C  U UG     -    UUAAAG 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Star sequence

Npo-Mir-1994-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGAAGAACUUGUUGUCUUCACA -23
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Mature sequence

Npo-Mir-1994-P2_3p (predicted)

mirBase accessionNone
Sequence
38- UGAGACAGUGUGUCCUCCCUCA -60
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