MirGeneDB ID | Npo-Mir-1994-P2 |
---|---|
Family name | MIR-1994 (all species) |
Seed | GAGACAG |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-1994-P1 |
Orthologues | Agr-Mir-1994-P2 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P2 Efe-Mir-1994 Esc-Mir-1994-P2 Hru-Mir-1994-P2 Lan-Mir-1994-o2a Lan-Mir-1994-o2b Lgi-Mir-1994-P2 Llo-Mir-1994 Mgi-Mir-1994-P2 Mom-Mir-1994-P2 Obi-Mir-1994-P2 Ovu-Mir-1994-P2 Pve-Mir-1994-P2a Pve-Mir-1994-P2b Rph-Mir-1994-P2 War-Mir-1994-P2 |
Node of Origin (locus) | Mollusca |
Node of Origin (family) | Lophotrochozoa |
Genome context (GCA_018389105_NPO) |
JACATO010001148.1: 5202-5261 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AAAAGCAGUGACUUAAUGGCUGCUGUUCUUAGGAAGAACUUGUUGUCUUCACAUGAUCUUGAAAUUUGUGAGACAGUGUGUCCUCCCUCAGAUCCCGUGUUGUAGCCAAACCAUCCAUUAGet precursor sequence |
Structure | 10 20 30 40 50 AAAAGCAGUGACUUAAU--| UGCUGU U A A U GU U UGAUCU GGC UCU AGG AG AC U UGUCU CACA \ UUG AGA UCC UC UG G ACAGA GUGU U AUUACCUACCAAACCGAUG^ UGCCCU C C C U UG - UUAAAG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14) |
Star sequence | Npo-Mir-1994-P2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGAAGAACUUGUUGUCUUCACA -23
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|
Mature sequence | Npo-Mir-1994-P2_3p (predicted) |
mirBase accession | None |
Sequence |
38- UGAGACAGUGUGUCCUCCCUCA -60
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|