MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-1994-P1

Family name MIR-1994 (all species)
Seed GAGACAG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-1994-P2 
Orthologues Agr-Mir-1994-P1  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P1  Efe-Mir-1994  Esc-Mir-1994-P1  Hru-Mir-1994-P1  Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lgi-Mir-1994-P1  Lhy-Mir-1994-P1  Llo-Mir-1994  Mgi-Mir-1994-P1  Mom-Mir-1994-P1  Obi-Mir-1994-P1  Ovu-Mir-1994-P1  Pve-Mir-1994-P1  Rph-Mir-1994-P1  War-Mir-1994-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_018389105_NPO)
JACATO010001148.1: 4537-4597 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGACAAGGUUUACCUUAAGUCAUGGGUCAAGGGAGGCUAUGCUGUUCUGCAUGCAUGUGUUUGAAACAUGAGACAGUGUGUCCUCCCUUCAGCUGUGGCUCAGAGCUGCAGGGAGGGGAA
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Structure
        10          20        30        40        50        60 
CUGACAAGGUUUACCUUA--|       GUC        C        U  G    CAUGUG 
                    AGUCAUGG   AAGGGAGG UAUGCUGU CU CAUG      \
                    UCGGUGUC   UUCCCUCC GUGUGACA GA GUAC      U
AAGGGGAGGGACGUCGAGAC^       GAC        U        -  -    AAAGUU 
 .       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-1994-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGAGGCUAUGCUGUUCUGCAUG -24
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Mature sequence

Npo-Mir-1994-P1_3p (predicted)

mirBase accessionNone
Sequence
39- UGAGACAGUGUGUCCUCCCUUC -61
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