Mir-1994-P1

MirGeneDB ID

Ovu-Mir-1994-P1

Family name

MIR-1994 (all species)

Seed

GAGACAG

Species

Common octopus (Octopus vulgaris)

MiRBase ID

Paralogues

Ovu-Mir-1994-P2

Orthologues

Agr-Mir-1994-P1 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P1 Efe-Mir-1994 Esc-Mir-1994-P1 Hru-Mir-1994-P1 Lan-Mir-1994-o1a Lan-Mir-1994-o1b Lgi-Mir-1994-P1 Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mom-Mir-1994-P1 Npo-Mir-1994-P1 Obi-Mir-1994-P1 Pve-Mir-1994-P1 Rph-Mir-1994-P1 War-Mir-1994-P1

Node of Origin (locus)

Mollusca

Node of Origin (family)

Lophotrochozoa

Genome context
(GCA_003957725.1_ASM395772v1_OVU)

RXHP01025550.1: 105972-106034 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAAAAAUAAUUCGACAAUGACCAUAUGCUAAGAGUGGACACUCUGUUCUACAUGUUGAAAAGUACUGACCAUGAGACAGUGUGUCCUCCCUUGGCAGGGGUCAAAUUGCUGCUGCCCAAAGAU

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Structure

        10           20        30        40        50        60  
CAAAAAUAAUUCGACAA---|    AUA       AGU      U    U  A    UUGAAAA 
                    UGACC   UGCUAAG   GGACAC CUGU CU CAUG       \
                    ACUGG   ACGGUUC   CCUGUG GACA GA GUAC       G
UAGAAACCCGUCGUCGUUAA^    GG-       CCU      U    -  -    CAGUCAU 
 120       110       100         90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ax	Ce	Fr	He	In	Op	Op	Pe	Po	Re	Sk	St	Su	Su	Te	Ve	Vi	Wh

Star sequence

Ovu-Mir-1994-P1_5p*

mirBase accession

None

Sequence

0- AGAGUGGACACUCUGUUCUACAUG -24

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Mature sequence

Ovu-Mir-1994-P1_3p

mirBase accession

None

Sequence

41- UGAGACAGUGUGUCCUCCCUUG -63

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