MirGeneDB ID | Ofu-Mir-1994-P9 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-1994-P10
|
Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
Node of Origin (locus) |
O. fusiformis
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 56576378-56576438 [+]
|
Precursor (pre-Mir +30nt flank) |
CCAAGGAUUAAGAGCAUAAUCUUCACUCGUAGGGGGCUCACAUUGAUGUCAUAAUAUAUCAUUAACUUAUGAGACAGUGUGUCCUCCCUGUGGAUGAAGGUUCGAGCAUCAAAUACCUUAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAAGGAUUAAGAGCAU--| CU CU AUG AUAUAU
AAUCUUCA CGUAGGGGG CACAUUG UCAUA C
UUGGAAGU GUGUCCCUC GUGUGAC AGUAU A
GAUUCCAUAAACUACGAGC^ AG CU AG- UCAAUU
. 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ofu-Mir-1994-P9_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGGGGCUCACAUUGAUGUCAUA -23
Get sequence
|
Mature sequence |
Ofu-Mir-1994-P9_3p |
mirBase accession | None |
Sequence |
39- UGAGACAGUGUGUCCUCCCUGU -61
Get sequence
|