| MirGeneDB ID | Ofu-Mir-1994-P9 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-1994-P10
|
|---|
| Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
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| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 56576378-56576438 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAAGGAUUAAGAGCAUAAUCUUCACUCGUAGGGGGCUCACAUUGAUGUCAUAAUAUAUCAUUAACUUAUGAGACAGUGUGUCCUCCCUGUGGAUGAAGGUUCGAGCAUCAAAUACCUUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAAGGAUUAAGAGCAU--| CU CU AUG AUAUAU
AAUCUUCA CGUAGGGGG CACAUUG UCAUA C
UUGGAAGU GUGUCCCUC GUGUGAC AGUAU A
GAUUCCAUAAACUACGAGC^ AG CU AG- UCAAUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Ofu-Mir-1994-P9_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGGGCUCACAUUGAUGUCAUA -23
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-1994-P9_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGACAGUGUGUCCUCCCUGU -61
Get sequence
|
|---|
