MirGeneDB ID | Ofu-Mir-1994-P10 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-1994-P9
|
Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
Node of Origin (locus) |
O. fusiformis
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 56578318-56578375 [+]
|
Precursor (pre-Mir +30nt flank) |
CCGGAGGAUUUCAAACUGCGUCAUGUUGUUCGGGACGACACUCUAUCUCGUUUUGUAUUAAAGCAAUGAGACAGUGUGUCCUCCCUCGUGGCGACGCUAAACUCAACCCGGGACACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGGAGGAUUUCAAACU----| AU UG UC C U A UUGUA
GCGUC GU U GGGA GACAC CU UCUCGUU U
CGCAG CG G CCCU CUGUG GA AGAGUAA U
GACACAGGGCCCAACUCAAAU^ -- GU CU C U C CGAAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ofu-Mir-1994-P10_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGGGACGACACUCUAUCUCGUU -22
Get sequence
|
Mature sequence |
Ofu-Mir-1994-P10_3p |
mirBase accession | None |
Sequence |
36- UGAGACAGUGUGUCCUCCCUCG -58
Get sequence
|