| MirGeneDB ID | Ofu-Mir-1994-P10 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-1994-P9
|
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| Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
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| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 56578318-56578375 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CCGGAGGAUUUCAAACUGCGUCAUGUUGUUCGGGACGACACUCUAUCUCGUUUUGUAUUAAAGCAAUGAGACAGUGUGUCCUCCCUCGUGGCGACGCUAAACUCAACCCGGGACACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGGAGGAUUUCAAACU----| AU UG UC C U A UUGUA
GCGUC GU U GGGA GACAC CU UCUCGUU U
CGCAG CG G CCCU CUGUG GA AGAGUAA U
GACACAGGGCCCAACUCAAAU^ -- GU CU C U C CGAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ofu-Mir-1994-P10_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CGGGACGACACUCUAUCUCGUU -22
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-1994-P10_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGAGACAGUGUGUCCUCCCUCG -58
Get sequence
|
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