| MirGeneDB ID | Pau-Mir-1994-o3 |
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| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Horseshoe worm (Phoronis australis) |
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| MiRBase ID |
|
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| Paralogues |
Pau-Mir-1994-o4
|
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| Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
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| Node of Origin (locus) |
P. australis
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(Phoronis_australis_GCA_002633005) |
NMRA01000271.1: 209561-209618 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAUUAUCAACCUCAAACUGCGUUUAUAUGAGGGCGGUCAGGCUGAGCUCGUGUGGAUGAGCGCCAUGAGACAGUAUGUCCUCCCUAAUGUAAGCACGGAUCAAUCAACGUGGGUUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAUUAUCAACCUCAAA--| C G C U G AG UGGAU
CUG GUUUAUAU AGGG GG CA GCUG CUCGUG \
GGC CGAAUGUA UCCC CC GU UGAC GAGUAC G
GGUUGGGUGCAACUAACUA^ A A U U A A- CGCGA
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | It is unclear how the two paralogues of Mir-1994 in the phoronid and the brachiopod relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pau-Mir-1994-o3_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCGGUCAGGCUGAGCUCGUG -23
Get sequence
|
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| Mature sequence |
Pau-Mir-1994-o3_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- UGAGACAGUAUGUCCUCCCUAA -58
Get sequence
|
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