MirGeneDB ID | Snu-Mir-1994-P7 |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Peanut worm (Sipunculus nudus) |
MiRBase ID |
|
Paralogues |
Snu-Mir-1994-P5
Snu-Mir-1994-P6
Snu-Mir-1994-P8
|
Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
Node of Origin (locus) |
S. nudus
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049320.1: 15730544-15730600 [-]
|
Precursor (pre-Mir +30nt flank) |
AUAUACCUUUAAGAUAUGGUUCUGUUUUCCGGGGAACAAGCUUGCCUCGUUUUCGAUUUUUUAAUGAGACAGCGUGUCCUCCCGUGGAACGGAACUUGAAAUAUCAACCACCAUGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUAUACCUUUAAGAUAU---- UC -|A A U C UUCGA
GGUUCUGUUU CGGG G ACA GCU G CUCGUU \
UCAAGGCAAG GCCC C UGU CGA C GAGUAA U
CUGUACCACCAACUAUAAAGU GU U^C G - A UUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Snu-Mir-1994-P7_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGGAACAAGCUUGCCUCGUU -21
Get sequence
|
Mature sequence |
Snu-Mir-1994-P7_3p |
mirBase accession | None |
Sequence |
34- UGAGACAGCGUGUCCUCCCGUGG -57
Get sequence
|