| MirGeneDB ID | Snu-Mir-1994-P5 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
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| Paralogues |
Snu-Mir-1994-P6
Snu-Mir-1994-P7
Snu-Mir-1994-P8
|
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| Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
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| Node of Origin (locus) |
S. nudus
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049320.1: 15732440-15732501 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CGCGAUCCUAGCUGAUUCGGUCACAUGAUGCGGGAUGACUCGCUCGUCUCCAUGAUUCAUAAAUAUUCAUGAGACAGUGUGUCCUCCCGUCAUCACGUGAACCUGACGUCAUCAAAUGCACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGCGAUCCUAGCUGAUUC- - A -| U U C C GAUUCAU
GG UCAC UGAUG CGGGA GAC CGCU GUCUC AU \
CC AGUG ACUAC GCCCU CUG GUGA CAGAG UA A
CCACGUAAACUACUGCAGU A C U^ C U - - CUUAUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-1994-P5_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGAUGACUCGCUCGUCUCCAU -23
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-1994-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGACAGUGUGUCCUCCCGUCA -62
Get sequence
|
|---|
