| MirGeneDB ID | Snu-Mir-1994-P8 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
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| Paralogues |
Snu-Mir-1994-P5
Snu-Mir-1994-P6
Snu-Mir-1994-P7
|
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| Orthologues |
Cte-Mir-1994
Dgr-Mir-1994
Efe-Mir-1994
Llo-Mir-1994
|
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| Node of Origin (locus) |
S. nudus
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049320.1: 15729545-15729601 [-]
|
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Precursor
(pre-Mir +30nt flank) |
UAUACAUUUGGAGAUAUGGUUCUGUUUUCCGGGGAACACGCUUGCCUCGUUUUCAUUAUUUUAAUGAGACAGCGUGUCCUCCCGUGGAAUCGAACUUGAAUUAUCAUCGCACAUGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUACAUUUGGAGAUAU---- U UC -|A U C UUCAU
GGUUC GUUU CGGG G ACACGCU G CUCGUU \
UCAAG UAAG GCCC C UGUGCGA C GAGUAA U
CGGUACACGCUACUAUUAAGU C GU U^C - A UUUUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-1994-P8_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGGGAACACGCUUGCCUCGUU -21
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-1994-P8_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UGAGACAGCGUGUCCUCCCGUGG -57
Get sequence
|
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