MirGeneDB ID | Obi-Mir-216-P2c |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-216-P2d
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Agr-Mir-216-P2c
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Cte-Mir-216-P2c
Dan-Mir-216-P2
Dgr-Mir-216-P2c
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Eba-Mir-216-P2c
Efe-Mir-216-P2c
Hme-Mir-216-P2
Isc-Mir-216-P2
Lhy-Mir-216-P2c
Llo-Mir-216-P2c
Mom-Mir-216-P2c
Npo-Mir-216-P2c
Ofu-Mir-216-P2c
Ovu-Mir-216-P2c
Pau-Mir-216-P2c
Pca-Mir-216-P2
Snu-Mir-216-P2c
Tca-Mir-216-P2
Tur-Mir-216-P2
War-Mir-216-P2c
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (PRJNA270931_OBI) |
KQ415847: 307656-307715 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAACCACUCAUUGAUUGACAGGUGCUUGUGUAAUCUCAGCUGGUAAUAUAUGAGUGGUUCAAUCUCUCACCGUUACUCGCUGUGGUUGAACUAUCACCUUGCCAAAACAUCUCAACGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAACCACUCAUUGAUUGAC--| CUU G U U AUA GUGGUU
AGGUG GU UAAUC CAGC GGUAAU UGA \
UCCAC CA GUUGG GUCG UCAUUG ACU C
CUUGCAACUCUACAAAACCGU^ UAU A U C CC- CUCUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Obi-Mir-216-P2c_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUAUAUGA -23
Get sequence
|
Star sequence |
Obi-Mir-216-P2c_3p* |
mirBase accession | None |
Sequence |
37- CACCGUUACUCGCUGUGGUUGAA -60
Get sequence
|