MirGeneDB ID | Agr-Mir-216-P2c |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
|
Paralogues |
Agr-Mir-216-P1
Agr-Mir-216-P2d
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Cte-Mir-216-P2c
Dan-Mir-216-P2
Dgr-Mir-216-P2c
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Eba-Mir-216-P2c
Efe-Mir-216-P2c
Hme-Mir-216-P2
Isc-Mir-216-P2
Lhy-Mir-216-P2c
Llo-Mir-216-P2c
Mom-Mir-216-P2c
Npo-Mir-216-P2c
Obi-Mir-216-P2c
Ofu-Mir-216-P2c
Ovu-Mir-216-P2c
Pau-Mir-216-P2c
Pca-Mir-216-P2
Snu-Mir-216-P2c
Tca-Mir-216-P2
Tur-Mir-216-P2
War-Mir-216-P2c
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000010.1: 20312836-20312896 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGUUGUUUAAUGUUUGUAGAUGUUUGUCUAAUCUCAGCUGGUAAUUCUGAGUUUGAAUCAAUCCUCUCAAGUUACUAGCCGAGAUUACACAAGUGUCUGUUUAAUCGGCAUGGACUAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUGUUGUUUAAUGUUUG--| UG C A C UUUGAA
UAGA UUUGU UAAUCUC GCUGGUAAUU UGAG U
GUCU GAACA AUUAGAG CGAUCAUUGA ACUC C
CAAUCAGGUACGGCUAAUUU^ GU C C - UCCUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Agr-Mir-216-P2c_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUUCUGAG -23
Get sequence
|
Star sequence |
Agr-Mir-216-P2c_3p* |
mirBase accession | None |
Sequence |
39- CAAGUUACUAGCCGAGAUUACA -61
Get sequence
|