MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-216b
Paralogues Tni-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 17: 5747094-5747154 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-216-P2a 17: 5747094-5747154 [+] UCSC Ensembl
Mir-216-P2b 17: 5747764-5747826 [+] UCSC Ensembl
Mir-217 17: 5748319-5748377 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAACAAAAGGUGUGUUUUAGGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUUUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUUUAAAAUGGCUGCAUGACCAAA
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Structure
        10          20        30        40        50          
CAACAAAAGGUGUGUUU--|    U      UU       G    CAAC     UGGUGAU 
                   UAGGU GACUGU  AAUCUCU CAGG    UGUGA       \
                   AUUUA UUGACG  UUAGAGA GUCC    ACACU       U
AAACCAGUACGUCGGUAAA^    U      UC       G    ACUA     CUUAUUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-216-P2a_5p
mirBase accessionMIMAT0002976
Sequence 
0- UAAUCUCUGCAGGCAACUGUGA -22
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Star sequence

Tni-Mir-216-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
39- ACAAUCACCUGGAGAGAUUCUG -61
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