MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-216b
Paralogues Cli-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(colLiv2)		 scaffold628: 125966-126027 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-216-P2a scaffold628: 125966-126027 [+]
Mir-216-P2b scaffold628: 130781-130841 [+]
Mir-217-v2 scaffold628: 133576-133636 [+]
Mir-217-v1 scaffold628: 133577-133635 [+]
Precursor
(pre-Mir +30nt flank)
CUUCAACCUGGAUAAAAGUCGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCACCUUCAGACACAGUAAUUAU
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Structure
        10        20           30        40        50        60
CUUCAACCUGGAUAAAAGUC- -    C  -|   A          C  A     UGUCUUU 
                     G CAGA UG GGAA UCUCUGCAGG AA UGUGA       A
                     C GUCU AC UCUU AGAGAUGUCC UU ACACU       U
UAUUAAUGACACAGACUUCCA G    A  A^   -          A  A     CUAACGA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-216-P2a_5p
mirBase accessionMIMAT0038598
Sequence 
0- AAAUCUCUGCAGGCAAAUGUGA -22
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Star sequence

Cli-Mir-216-P2a_3p*
mirBase accessionMIMAT0038599
Sequence 
40- ACAAUUACCUGUAGAGAUUCUA -62
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