Mir-216-P2a

MirGeneDB ID

Sto-Mir-216-P2a

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Ami-Mir-216-P2a Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cgi-Mir-216-P2 Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Efe-Mir-216-P2 Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Lch-Mir-216-P2a Lgi-Mir-216-P2 Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pbv-Mir-216-P2a Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01001329.1: 91747-91807 [+]

Precursor
(pre-Mir +30nt flank)

ACUUGUUGUGAUAUCUAGCUGCAGACUAGAUAAUCUCUGCAGGCAACUGUGAAGUAUUUUCACAAUCUCACAAUAGCCUACAGAGAUUCUGUAGUCUGUUGCCUCUACUAACAACUUCUCA

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Structure

        10          20        30        40        50          
ACUUGUUGUGAUAUCUA--| U        GAU        C    AAC     AGUAUUU 
                   GC GCAGACUA   AAUCUCUG AGGC   UGUGA       \
                   CG UGUCUGAU   UUAGAGAC UCCG   ACACU       U
ACUCUUCAACAAUCAUCUC^ U        GUC        A    AUA     CUAACAC 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-216-P2a_5p

mirBase accession

None

Sequence

0- UAAUCUCUGCAGGCAACUGUGA -22

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Star sequence

Sto-Mir-216-P2a_3p*

mirBase accession

None

Sequence

39- ACAAUAGCCUACAGAGAUUCUG -61

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