MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(LepOcu1)		 LG16: 3940971-3941030 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGCCCUGCCGGCCUGGGGCCUGACUGUGUAAUCUCUGCAGGCAACUGUGACGUGUUUCCGUGUCUCACAAUCACCUGGAGAGAUUCGGCAGUCCGUCCGCUCCGUGCCGGGACUGGGA
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Structure
        10           20        30        40        50         
GCCGCCCUGCCGGCCUG---|   CU      GU       G    CAAC     CGUGUU 
                    GGGC  GACUGU  AAUCUCU CAGG    UGUGA      U
                    CCUG  CUGACG  UUAGAGA GUCC    ACACU      C
AGGGUCAGGGCCGUGCCUCG^   C-      GC       G    ACUA     CUGUGC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-216-P2a_5p
mirBase accessionNone
Sequence 
0- UAAUCUCUGCAGGCAACUGUGA -22
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Star sequence

Loc-Mir-216-P2a_3p*
mirBase accessionNone
Sequence 
38- ACAAUCACCUGGAGAGAUUCGG -60
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