MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-216b
Paralogues Cpi-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(chrPic1)		 JH584878: 229316-229377 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-217-v2 JH584878: 211419-211479 [-] UCSC Ensembl
Mir-217-v1 JH584878: 211420-211478 [-] UCSC Ensembl
Mir-216-P2a JH584878: 229316-229377 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCAGCCUGGAUACAAGUCAUAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUAUUUAUAGCAAUCUCACAAUUACCUGUAGAGUUUCUGCAAUCUGAUCUCUUCAUGCACAGUAACUAU
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Structure
        10        20           30        40        50        60
CUUCAGCCUGGAUACAAGUCA--    C  -|    U         C  A     UGUAUUU 
                       UAGA UG GGAAA CUCUGCAGG AA UGUGA       A
                       GUCU AC UCUUU GAGAUGUCC UU ACACU       U
UAUCAAUGACACGUACUUCUCUA    A  G^    -         A  A     CUAACGA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-216-P2a_5p
mirBase accessionMIMAT0037844
Sequence 
0- AAAUCUCUGCAGGCAAAUGUGA -22
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Star sequence

Cpi-Mir-216-P2a_3p*
mirBase accessionNone
Sequence 
40- ACAAUUACCUGUAGAGUUUCUG -62
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