Mir-216-P2a

MirGeneDB ID

Gga-Mir-216-P2a

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-216b

Paralogues

Gga-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aga-Mir-216-P2 Ami-Mir-216-P2a Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cja-Mir-216-P2a Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Eca-Mir-216-P2a Ete-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Laf-Mir-216-P2a Lch-Mir-216-P2a Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmr-Mir-216-P2a Mmu-Mir-216-P2a Neu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pab-Mir-216-P2a Pbv-Mir-216-P2a Pca-Mir-216-P2 Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a Tur-Mir-216-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gallus_gallus.GRCg6a)

3: 350639-350700 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-217-v2 3: 342568-342628 [-] UCSC Ensembl
Mir-217-v1 3: 342569-342627 [-] UCSC Ensembl
Mir-216-P2b 3: 345249-345307 [-] UCSC Ensembl
Mir-216-P2a 3: 350639-350700 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCUUCCUGGAUGUGAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUCUGCAUACACAGUAAUUAU

Get precursor sequence

Structure

        10        20           30        40        50        60
CUUCUUCCUGGAUGUGAGUCA--    C  -|   A          C  A     UGUCUUU 
                       CAGA UG GGAA UCUCUGCAGG AA UGUGA       A
                       GUCU AC UCUU AGAGAUGUCC UU ACACU       U
UAUUAAUGACACAUACGUCUACG    A  A^   -          A  A     CUAACGA 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-216-P2a_5p

mirBase accession

MIMAT0007748

Sequence

0- AAAUCUCUGCAGGCAAAUGUGA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-216b
miRDB: MIMAT0007748

Star sequence

Gga-Mir-216-P2a_3p*

mirBase accession

None

Sequence

40- ACAAUUACCUGUAGAGAUUCUA -62

Get sequence