MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-216b
Paralogues Cpo-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(cavPor3)		 scaffold_48: 8638120-8638180 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-216-P2a scaffold_48: 8638120-8638180 [+] UCSC
Mir-216-P2b scaffold_48: 8647413-8647474 [+] UCSC
Mir-217-v2 scaffold_48: 8653829-8653889 [+] UCSC
Mir-217-v1 scaffold_48: 8653830-8653888 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUAAAUACAAUGUCAGAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGCUUCCAGCAUCAAACUGUU
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Structure
        10         20         30        40        50          
UUAAAUACAAUGUCAGA-  GG-|      GAA     C      C  A    AUGUCACU 
                  GU   CAGACUG   AAUCU UGCAGG AA UGUG        \
                  CG   GUCUGAC   UUAGA AUGUCC UU ACAC        G
UUGUCAAACUACGACCUU  ACA^      GUC     A      A  C    ACUAAGAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-216-P2a_5p
mirBase accessionMIMAT0047121
Sequence 
0- AAAUCUCUGCAGGCAAAUGUGA -22
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Star sequence

Cpo-Mir-216-P2a_3p*
mirBase accessionMIMAT0047122
Sequence 
39- ACACUUACCUGUAAAGAUUCUG -61
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