MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-216a
Paralogues Cli-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Aga-Mir-216-P2  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cja-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2b  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Laf-Mir-216-P2b  Lch-Mir-216-P2b  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmr-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Neu-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pab-Mir-216-P2b  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Tur-Mir-216-P2  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(colLiv2)		 scaffold628: 130781-130841 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2b)		 Mir-216-P2a scaffold628: 125966-126027 [+]
Mir-216-P2b scaffold628: 130781-130841 [+]
Mir-217-v2 scaffold628: 133576-133636 [+]
Mir-217-v1 scaffold628: 133577-133635 [+]
Precursor
(pre-Mir +30nt flank)
AGGCCUGACCUGGACGGCUGUGAAUUGGCUUAAUCUCAGCUGGCAACUGUGAGCCGCUAAUAACUCUCUCACAGUGGUAUCUGGGAUUAUGCUAAACACAGCGAUUUCUGCGCUCUGCUGG
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Structure
        10           20        30        40        50        60
AGGCCUGACCUGGACGG---|    AA     U         CUG  A        CCGCUA 
                    CUGUG  UUGGC UAAUCUCAG   GC ACUGUGAG      A
                    GACAC  AAUCG AUUAGGGUC   UG UGACACUC      U
GGUCGUCUCGCGUCUUUAGC^    A-     U         UA-  G        UCUCAA 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-216-P2b_5p
mirBase accessionMIMAT0038596
Sequence 
0- UAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Cli-Mir-216-P2b_3p*
mirBase accessionMIMAT0038597
Sequence 
39- CACAGUGGUAUCUGGGAUUAUG -61
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