Mir-216-P2b

MirGeneDB ID

Ami-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-216a

Paralogues

Ami-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713592.1: 3395052-3395113 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v2 NW_017713592.1: 3391408-3391468 [-] UCSC
Mir-217-v1 NW_017713592.1: 3391409-3391467 [-] UCSC
Mir-216-P2b NW_017713592.1: 3395052-3395113 [-] UCSC
Mir-216-P2a NW_017713592.1: 3406274-3406335 [-] UCSC

Precursor
(pre-Mir +30nt flank)

AGGCCUAACCUGGAUGGCUGUGAAUUGGCAUAAUCUCAGCUGGCAACUGUGAGCAGUUCAUAAAUUCUCUCACAGUUGUAUCUGGGAUUAUGCUAAACAUAGCAAUUUCUUUGCUCUAAUGG

Get precursor sequence

Structure

        10           20        30        40        50        60 
AGGCCUAACCUGGAUGG---|    AA               CUG           CAGUUCA 
                    CUGUG  UUGGCAUAAUCUCAG   GCAACUGUGAG       \
                    GAUAC  AAUCGUAUUAGGGUC   UGUUGACACUC       U
GGUAAUCUCGUUUCUUUAAC^    A-               UA-           UCUUAAA 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Ami-Mir-216-P2b_5p

mirBase accession

MIMAT0038242

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Star sequence

Ami-Mir-216-P2b_3p* (predicted)

mirBase accession

None

Sequence

40- CACAGUUGUAUCUGGGAUUAUG -62

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