MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-217-v2

Family name MIR-217 (all species)
Seed UACUGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-217
Paralogues Ami-Mir-217-v1 
Orthologues Aca-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v2  Cfa-Mir-217-v2  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v2  Cpo-Mir-217-v2  Dno-Mir-217-v2  Dre-Mir-217-v2  Ete-Mir-217-v2  Gga-Mir-217-v2  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v2  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v2  Mmu-Mir-217-v2  Mun-Mir-217-v2  Oan-Mir-217-v2  Ocu-Mir-217-v2  Pbv-Mir-217-v2  Rno-Mir-217-v2  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v2  Tgu-Mir-217-v2  Tni-Mir-217  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713592.1: 3391408-3391468 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-217-v2)		 Mir-217-v2 NW_017713592.1: 3391408-3391468 [-] UCSC
Mir-217-v1 NW_017713592.1: 3391409-3391467 [-] UCSC
Mir-216-P2b NW_017713592.1: 3395052-3395113 [-] UCSC
Mir-216-P2a NW_017713592.1: 3406274-3406335 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UAAGCCACUCCAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCUGUGAAUGUA
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Structure
        10        20          30        40        50        60
UAAGCCACUCCAGAGUUUUU--|    CGC  A  C     C          U  AUAAUA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
AUGUAAGUGUCUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-217-v2_5p
mirBase accessionMIMAT0038245
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
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Star sequence

Ami-Mir-217-v2_3p*
mirBase accessionMIMAT0038246
Sequence 
39- AUCAGUUCCUAAUGCAUUGCCU -61
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