MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-217

Family name MIR-217 (all species)
Seed ACUGCAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-217
Paralogues
Orthologues Aca-Mir-217-v1  Aca-Mir-217-v2  Ami-Mir-217-v1  Ami-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Bta-Mir-217-v2  Cfa-Mir-217-v1  Cfa-Mir-217-v2  Cja-Mir-217-v1  Cja-Mir-217-v2  Cli-Mir-217-v1  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v1  Cpi-Mir-217-v2  Cpo-Mir-217-v1  Cpo-Mir-217-v2  Dno-Mir-217-v1  Dno-Mir-217-v2  Dre-Mir-217-v1  Dre-Mir-217-v2  Ebu-Mir-217-P1-v1  Ebu-Mir-217-P1-v2  Ebu-Mir-217-P2-v1  Ebu-Mir-217-P2-v2  Eca-Mir-217-v1  Eca-Mir-217-v2  Ete-Mir-217-v1  Ete-Mir-217-v2  Gga-Mir-217-v1  Gga-Mir-217-v2  Gja-Mir-217-v1  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v1  Hsa-Mir-217-v2  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mml-Mir-217-v2  Mmr-Mir-217  Mmu-Mir-217-v1  Mmu-Mir-217-v2  Mun-Mir-217-v1  Mun-Mir-217-v2  Neu-Mir-217-v1  Neu-Mir-217-v2  Oan-Mir-217-v1  Oan-Mir-217-v2  Ocu-Mir-217-v1  Ocu-Mir-217-v2  Pab-Mir-217-v1  Pab-Mir-217-v2  Pbv-Mir-217-v1  Pbv-Mir-217-v2  Pma-Mir-217-P1  Pma-Mir-217-P2-v1  Pma-Mir-217-P2-v2  Rno-Mir-217-v1  Rno-Mir-217-v2  Sha-Mir-217-v1  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v1  Sto-Mir-217-v2  Tgu-Mir-217-v1  Tgu-Mir-217-v2  Xla-Mir-217-P3-v1  Xla-Mir-217-P3-v2  Xla-Mir-217-P4-v1  Xla-Mir-217-P4-v2  Xtr-Mir-217-v1  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 17: 5748319-5748377 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217)		 Mir-216-P2a 17: 5747094-5747154 [+] UCSC Ensembl
Mir-216-P2b 17: 5747764-5747826 [+] UCSC Ensembl
Mir-217 17: 5748319-5748377 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCGAUAAAGAACCUUCUUGAUGUGGAUGAUACUGCAUCAGGAACUGAUUGGCUGAUGCUUAGUACCCAACAGUACCUGAUGCAUUGCCUUCAGCAUUGAAAGAAACGUCACAAAGCUC
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Structure
        10          20        30        40        50         
AUCGAUAAAGAACCUUC--|UG    G  UGA  C         A    A    CUGAUG 
                   U  AUGU GA   UA UGCAUCAGG ACUG UUGG      C
                   A  UACG CU   GU ACGUAGUCC UGAC AACC      U
CUCGAAACACUGCAAAGAA^GU    A  UCC  U         A    -    CAUGAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-217_5p
mirBase accessionMIMAT0002972
Sequence 
0- UACUGCAUCAGGAACUGAUUGGC -23
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Star sequence

Tni-Mir-217_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAACAGUACCUGAUGCAUUGCC -59
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