MirGeneDB 3.0

MirGeneDB ID

Ebu-Mir-217-P1-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-217-P1-v2  Ebu-Mir-217-P2-v1  Ebu-Mir-217-P2-v2 
Orthologues Bfl-Mir-217  Bla-Mir-217  Cmi-Mir-217  Gmo-Mir-217  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mmr-Mir-217  Pma-Mir-217-P1  Spt-Mir-217  Tni-Mir-217 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Chordata
Genome context
(Eburgeri_3)
FYBX02010123.1: 688386-688444 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCAGAACUGGCUUGUUUGAUGUCAUAGAUACUGCAUCAGGAACUGAUAGGGUAAUGCUCUAUCGCCGUCAGUUCCUAAUGCACUGCCUUCAGCAUCUACGCCAGCAGCUGGGGUGAU
Get precursor sequence
Structure
        10          20        30        40        50         
CGUCAGAACUGGCUUGUUU--|    CAU  A  C     C          A  GUAAUG 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      C
                     CUACG   UC GU ACGUA UCCUUGACUG CC      U
UAGUGGGGUCGACGACCGCAU^    ACU  C  C     A          -  GCUAUC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-217-P1-v1_5p

mirBase accessionNone
Sequence
0- UACUGCAUCAGGAACUGAUAGGG -23
Get sequence
Star sequence

Ebu-Mir-217-P1-v1_3p* (predicted)

mirBase accessionNone
Sequence
37- CGUCAGUUCCUAAUGCACUGCC -59
Get sequence