Mir-217-P1

MirGeneDB ID

Pma-Mir-217-P1

Family name

MIR-217 (all species)

Seed

ACUGCAU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-217a

Paralogues

Pma-Mir-217-P2-v1 Pma-Mir-217-P2-v2

Orthologues

Bfl-Mir-217 Bla-Mir-217 Cmi-Mir-217 Ebu-Mir-217-P1-v1 Ebu-Mir-217-P1-v2 Gmo-Mir-217 Laf-Mir-217 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mmr-Mir-217 Spt-Mir-217 Tni-Mir-217

Node of Origin (locus)

Cyclostomata

Node of Origin (family)

Chordata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046074.1: 1950981-1951039 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-217-P1)

Mir-217-P1 NC_046074.1: 1950981-1951039 [-] UCSC Ensembl
Mir-216-P2b1 NC_046074.1: 1952348-1952411 [-] UCSC Ensembl
Mir-216-P2a1 NC_046074.1: 1955059-1955119 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGAUCGGAGGUAUGUUUUGAUGUUGUGGAUACUGCAUCAGGAACUGAUUGGAUAGUGAUGGAUUGCCAUCAGUUCUUAAUGCAUUGUCUUCAGCAUCUAAACCAACAGCGUCAGCCAA

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Structure

        10          20        30        40        50         
UAGAUCGGAGGUAUGUUUU--|      U     C     C          U  AUAGUG 
                     GAUGUUG GGAUA UGCAU AGGAACUGAU GG      A
                     CUACGAC UCUGU ACGUA UUCUUGACUA CC      U
AACCGACUGCGACAACCAAAU^      U     U     A          -  GUUAGG 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-217-P1_5p

mirBase accession

MIMAT0019528

Sequence

0- UACUGCAUCAGGAACUGAUUGGA -23

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Star sequence

Pma-Mir-217-P1_3p*

mirBase accession

None

Sequence

37- CAUCAGUUCUUAAUGCAUUGUC -59

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