MirGeneDB ID | Pma-Mir-217-P2-v2 |
Family name |
MIR-217 (all species) |
Seed |
UACUGCA |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
|
Paralogues |
Pma-Mir-217-P1
Pma-Mir-217-P2-v1
|
Orthologues |
Bfl-Mir-217
Bla-Mir-217
Cmi-Mir-217
Ebu-Mir-217-P2-v1
Ebu-Mir-217-P2-v2
Gmo-Mir-217
Laf-Mir-217
Lch-Mir-217
Loc-Mir-217
Mal-Mir-217
Mdo-Mir-217
Mmr-Mir-217
Spt-Mir-217
Tni-Mir-217
|
Node of Origin (locus) |
Cyclostomata
|
Node of Origin (family) |
Chordata
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046097.1: 6160239-6160299 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGGAGGAGGCCCUAGUACUGGUGUUGAAGAUACUGCAUUCGGAACUGAUUGGGUACUCUGAGCUCGCCAUCAGUUCCUGAUGCAAUGCCUCCAGCACCAUCCAUAACGGAGCGACACGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGGAGGAGGCCCUAGUAC--| A A C C U GUACUC
UGGUGUUG AG UA UGCAUU GGAACUGAU GG U
ACCACGAC UC GU ACGUAG CCUUGACUA CC G
CCGCACAGCGAGGCAAUACCU^ C C A U - GCUCGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Mature sequence |
Pma-Mir-217-P2-v2_5p |
mirBase accession | None |
Sequence |
0- AUACUGCAUUCGGAACUGAUUGG -23
Get sequence
|
Star sequence |
Pma-Mir-217-P2-v2_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AUCAGUUCCUGAUGCAAUGCCU -61
Get sequence
|