MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-217

Family name MIR-217 (all species)
Seed ACUGCAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-217-v1  Aca-Mir-217-v2  Ami-Mir-217-v1  Ami-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Bta-Mir-217-v2  Cfa-Mir-217-v1  Cfa-Mir-217-v2  Cja-Mir-217-v1  Cja-Mir-217-v2  Cli-Mir-217-v1  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v1  Cpi-Mir-217-v2  Cpo-Mir-217-v1  Cpo-Mir-217-v2  Dno-Mir-217-v1  Dno-Mir-217-v2  Dre-Mir-217-v1  Dre-Mir-217-v2  Ebu-Mir-217-P1-v1  Ebu-Mir-217-P1-v2  Ebu-Mir-217-P2-v1  Ebu-Mir-217-P2-v2  Eca-Mir-217-v1  Eca-Mir-217-v2  Ete-Mir-217-v1  Ete-Mir-217-v2  Gga-Mir-217-v1  Gga-Mir-217-v2  Gja-Mir-217-v1  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v1  Hsa-Mir-217-v2  Laf-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mml-Mir-217-v2  Mmr-Mir-217  Mmu-Mir-217-v1  Mmu-Mir-217-v2  Mun-Mir-217-v1  Mun-Mir-217-v2  Neu-Mir-217-v1  Neu-Mir-217-v2  Oan-Mir-217-v1  Oan-Mir-217-v2  Ocu-Mir-217-v1  Ocu-Mir-217-v2  Pab-Mir-217-v1  Pab-Mir-217-v2  Pbv-Mir-217-v1  Pbv-Mir-217-v2  Pma-Mir-217-P1  Pma-Mir-217-P2-v1  Pma-Mir-217-P2-v2  Rno-Mir-217-v1  Rno-Mir-217-v2  Sha-Mir-217-v1  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v1  Sto-Mir-217-v2  Tgu-Mir-217-v1  Tgu-Mir-217-v2  Tni-Mir-217  Xla-Mir-217-P3-v1  Xla-Mir-217-P3-v2  Xla-Mir-217-P4-v1  Xla-Mir-217-P4-v2  Xtr-Mir-217-v1  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(LatCha1_add)		 JH127673.1: 312721-312779 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAAUAGCAGAGUUUGUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUACAACUUAACUACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAAUGAGAAU
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Structure
        10          20        30        40        50         
ACUGAAUAGCAGAGUUUGU--|    CGC  A  C     C          U  AUACAA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      C
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
UAAGAGUAACUACGAACAAAU^    ACU  C  U     A          -  AUCAAU 
       110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Lch-Mir-217_5p (predicted)
mirBase accessionNone
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Star sequence

Lch-Mir-217_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
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