Mir-217-v1

MirGeneDB ID

Sha-Mir-217-v1

Family name

MIR-217 (all species)

Seed

ACUGCAU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-217-v2

Orthologues

Aca-Mir-217-v1 Ami-Mir-217-v1 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v1 Cfa-Mir-217-v1 Cja-Mir-217-v1 Cli-Mir-217-v1 Cmi-Mir-217 Cpi-Mir-217-v1 Cpo-Mir-217-v1 Dno-Mir-217-v1 Dre-Mir-217-v1 Eca-Mir-217-v1 Ete-Mir-217-v1 Gga-Mir-217-v1 Gja-Mir-217-v1 Gmo-Mir-217 Hsa-Mir-217-v1 Laf-Mir-217 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v1 Mmr-Mir-217 Mmu-Mir-217-v1 Mun-Mir-217-v1 Neu-Mir-217-v1 Oan-Mir-217-v1 Ocu-Mir-217-v1 Pab-Mir-217-v1 Pbv-Mir-217-v1 Rno-Mir-217-v1 Spt-Mir-217 Sto-Mir-217-v1 Tgu-Mir-217-v1 Tni-Mir-217 Xtr-Mir-217-v1

Node of Origin (locus)

Chordata

Node of Origin (family)

Chordata

Genome context
(DEVIL_add)

GL834734.1: 1028038-1028096 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-217-v1)

Mir-216-P2a GL834734.1: 1003794-1003855 [+] UCSC Ensembl
Mir-216-P2b GL834734.1: 1019972-1020033 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUCAUUCCAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAUUCAGGUACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAAAGCUAAA

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Structure

        10          20        30        40        50         
UAGUCAUUCCAGAGUUUUU--|    CGC  A  C     C          U  AUAAUA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      U
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
AAAUCGAAACUACGAACAAAU^    ACU  C  U     A          -  AUGGAC 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-217-v1_5p

mirBase accession

None

Sequence

0- UACUGCAUCAGGAACUGAUUGGA -23

Get sequence

Star sequence

Sha-Mir-217-v1_3p*

mirBase accession

None

Sequence

37- CAUCAGUUCCUAAUGCAUUGCC -59

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