MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-217-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-217-v2 
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021928.1: 56264066-56264124 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUUAUUACAUAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUAAAUAC
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Structure
        10          20        30        40        50         
CGAUUAUUACAUAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
CAUAAAUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
       110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Cja-Mir-217-v1_5p
mirBase accessionNone
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Star sequence

Cja-Mir-217-v1_3p* (predicted)
mirBase accessionNone
Sequence 
35- ACCAUCAGUUCCUAAUGCAUUGCC -59
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