Mir-217-v1

MirGeneDB ID

Dre-Mir-217-v1

Family name

MIR-217 (all species)

Seed

ACUGCAU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-217

Paralogues

Dre-Mir-217-v2

Orthologues

Aca-Mir-217-v1 Ami-Mir-217-v1 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v1 Cfa-Mir-217-v1 Cja-Mir-217-v1 Cli-Mir-217-v1 Cmi-Mir-217 Cpi-Mir-217-v1 Cpo-Mir-217-v1 Dno-Mir-217-v1 Eca-Mir-217-v1 Ete-Mir-217-v1 Gga-Mir-217-v1 Gja-Mir-217-v1 Gmo-Mir-217 Hsa-Mir-217-v1 Laf-Mir-217 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v1 Mmr-Mir-217 Mmu-Mir-217-v1 Mun-Mir-217-v1 Neu-Mir-217-v1 Oan-Mir-217-v1 Ocu-Mir-217-v1 Pab-Mir-217-v1 Pbv-Mir-217-v1 Rno-Mir-217-v1 Sha-Mir-217-v1 Spt-Mir-217 Sto-Mir-217-v1 Tgu-Mir-217-v1 Tni-Mir-217 Xtr-Mir-217-v1

Node of Origin (locus)

Chordata

Node of Origin (family)

Chordata

Genome context
(danRer11)

chr22: 28779730-28779788 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-217-v1)

Mir-217-v1 chr22: 28779730-28779788 [-] UCSC Ensembl
Mir-217-v2 chr22: 28779730-28779789 [-] UCSC Ensembl
Mir-216-P2b chr22: 28779961-28780023 [-] UCSC Ensembl
Mir-216-P2a chr22: 28780265-28780323 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGCAUGAGAACUUUCUGAUGUUGGUGAUACUGCAUCAGGAACUGAUUGGAUGAUAUUCAGGAGCCAUCAGUUCCUGAUGCACUCCCAUCAGCAUCGAAAGAGACACCUGUGAGUUU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCUGCAUGAGAACUUUC--|          AUAC                U  AUGAUA 
                    UGAUGUUGGUG    UGCAUCAGGAACUGAU GG      U
                    GCUACGACUAC    ACGUAGUCCUUGACUA CC      U
UUUGAGUGUCCACAGAGAAA^          CCUC                -  GAGGAC 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-217-v1_5p

mirBase accession

MIMAT0001285

Sequence

0- UACUGCAUCAGGAACUGAUUGGA -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-217

Star sequence

Dre-Mir-217-v1_3p*

mirBase accession

None

Sequence

37- CAUCAGUUCCUGAUGCACUCCC -59

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